The Great Naruto Prime

Characters

 * Ayame Muto
 * Paul Seika
 * Seika Gekko
 * Yuki Seika
 * Dan Renato
 * Ace Renato
 * Yoko Buxaplenty
 * Hotaru
 * Enrique Eggman
 * Hydron Eggman
 * Miwa Tomoe
 * Egg Pawns
 * Ichika
 * Chifuyu
 * Cecilia
 * Houki
 * Honne
 * Manta
 * Yoh
 * Ryunosuke
 * Anna
 * Tao Ren
 * Tao Jun
 * Lyserg
 * Jeanne
 * Usui Horohoro
 * Millie
 * Lilly
 * Yohmei
 * Shichika Yasuri
 * Paul Gekko
 * Paul Gekko Junior
 * Legendary Paul Gekko
 * Tribunal Paul Gekko
 * Utrom Paul Gekko
 * Dark Paul Gekko
 * Paul Gekko Prime
 * Mecha Paul Gekko
 * Chibi Paul Gekko
 * Future Paul Gekko
 * Utakata Junior
 * Bastia
 * Vent
 * Aile
 * Dawn
 * Ralph
 * Micro
 * Leon
 * Donatello
 * Leonardo
 * Raphael
 * Michelangelo
 * Splinter
 * April O'Neil
 * Arnold Casey Jones
 * Happy
 * Natsu
 * Erza
 * Lucy
 * Gray Fullbuster
 * Mickey
 * Jet
 * Jonah
 * Droy
 * Wakaba
 * Ecor
 * Niggy
 * Krov
 * Elfman
 * Mirajane
 * Lisanna
 * Macao
 * Romeo
 * Alzack
 * Bisca
 * Loke
 * Ikaruga
 * Sho
 * Wally
 * Vidaldus
 * Fukuro
 * Millianna
 * Simon
 * Yuki Muto
 * Yami Yuki
 * Paul Ivo "Eggman" Robotnik
 * Orbot
 * Cubot
 * Decoe
 * Bocoe
 * Bokkun
 * Scratch
 * Grounder
 * Coconuts
 * Nui Harime
 * Toshiya Gekko
 * Shinjirō Nagita
 * Yuki Seika
 * Lyon Gekko
 * Mylene
 * Master Bison
 * Swat Troopers
 * Merutsu
 * Enerugi
 * Umi
 * Shinka
 * Tatsuya Gekko
 * Tatsu Gekko
 * Shō
 * Battle Lord Kukku XV
 * Stella Louise
 * Yuki Buxaplenty
 * Paul Buxaplenty
 * Kuon Buxaplenty/Hades Izanami
 * Senna Kyoudou
 * Soo-Won
 * Schroeder Shredder
 * Foot Mystics
 * Water Mystic
 * Metal Mystic
 * Fire Mystic
 * Earth Mystic
 * Wind Mystic
 * Ch'rell
 * Dr. Chaplin
 * Karai
 * Hun
 * Khan
 * Miwa
 * Razhar
 * Snake Face/Fishyface
 * Kavaxas
 * Tiger Claw
 * Yamato Takeru
 * Mikazuchi Tachibana
 * Oto Tachibana
 * Roka
 * Yamato Yoshio
 * Hayamika
 * Manta Namuji
 * Ma Horoba
 * Kushinaga
 * Mark
 * Kiriomi
 * Kushinada Kenobi
 * Naruto Uzumaki
 * Utakata
 * Yuki
 * Kaede Buxaplenty
 * Moriya Minakata
 * Ōkami Amaterasu
 * Issun
 * Sakuya
 * Waka
 * Susano
 * Kushi
 * Kakashi Prime
 * Yamato Prime
 * Naruto Prime
 * Sakura Prime
 * Sai Prime
 * Sasuke Prime
 * Killer B Prime
 * Utakata Prime
 * Hotaru Prime

Human and Animal

 * Amidamaru
 * Mosuke
 * Bason
 * Lee Pyron
 * Tokageroh
 * Morphine
 * Yamata no Orochi
 * Kororo
 * Shamash

Duel Monsters

 * Rainbow Dragon (as the Spirit of the Rainbow)
 * Yamata Dragon
 * Cyber End Dragon
 * Neo Blue-Eyes Ultimate Dragon
 * Divine Serpent Geh
 * Maiden with Eyes of Blue
 * Winda, the Priestess Gusto
 * Chimeratech Fortress Dragon
 * Stardust Dragon (as Fusion form of Malefic Truth Dragon, Rainbow Dragon and Spirit of Fire)
 * Malefic Truth Dragon

Gods

 * Raimei Ōtsutsuki
 * Great Spirit
 * Spirit of Fire